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Natural Prodcast Episode 11: Marnix Medema
… decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, and … that. But it was really fun working together with Kai and getting this thing off the ground. Two fanatic PhD students. … and I thought, OK, let’s make it open. Let’s not just keep it for myself, but let’s make this an open endeavor …
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Natural Prodcast Episode 15: Katherine Duncan
… goodness. I mean, if you were to find my scientific papers, that would be Katherine. Dan Udwary: Right. Kate Duncan: But … putting things, coalescing them, so that we can really make discoveries. And so I’m really excited to have read that … the field advances really quickly. This book just can’t keep up. You would need, like, a new addition each month or …
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Microbiome Data Science Team
… is creating new opportunities for breakthrough discoveries and catalyzing a major transition of biology … ( GEBA-type strains project ), the delineation of host-virus interactions, the exploration of the functional dark … with geNomad. Nat Biotechnol . Epub. Neri U. et al. (2022) Expansion of the global RNA virome reveals diverse …
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Partnerships: Adopt-A-Genome
JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis … recruit new talent for biosciences.  Adopt-a-Genome has:  11 CSU educators working with the JGI 120 genomes claimed … to a semester of some computational analysis. So they're getting research experience "light" and... they're getting a …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… since I’m off schedule, but this is an important one that wanted to get out there as soon as possible. Not one of … back in the ’50s and ’60s of the golden age of antibiotic discoveries. Everything that we’re finding seems to be a new … [CHUCKLES] And over the next few weeks or months, we’ll keep chugging on putting in the rest of the archaea and …
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Natural Prodcast Episode 19: Bill Fenical
… until the 70s, and how diving was the catalyst of that. We also talk about his move to microbiology, about … so about the same time– this was around 1990– we made some discoveries that really looked promising. We found that … Thanks so much for your time. And yeah, looking forward to keeping the conversation going with you. BILL FENICAL: …
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New Lineages of Life Group
… of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … investigate the coding potential to find novel functions that may impact microbiome structure and biogeochemical … available at Google Scholar. Schulz, C Abergel, T Woyke (2022) Giant virus biology and diversity in the era of …
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Viral Genomics Group
… however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at … uncultivated phages.  Current Opinion in Virology .  49 , 117-126 Berg, M. and Roux, S. (2021) Extreme dimensions — … with long standing virus-host interactions. ISME J.   15 , 1569–1584 Roux, S. et al. (2019) Cryptic inoviruses …
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DOE Metrics
… 190.304 109% 2,164 2,136 98.7% Q2 2025 175 152.100 87% 2,117 2,112 99.8% Q3 2025 175     2,140     Q4 2025 175     … target is based on 98% of the total available hours.   FY 2022 DOE Metrics There were 2,243 unique* JGI users in … 250 5.99 13,770.22 2100 2208 105 * Number of hours a week that sequencing machines are available to produce data. FY …
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Natural Prodcast Episode 17: Cassandra Quave
Usually when we do these interviews, most of the people that I think we’ve talked to so far I either know … primates should they pass the next steps in terms of live virus testing. So having that ability and willingness to … being just so incredibly important to advancing these discoveries. The idea that something can go literally from …
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Natural Prodcast Episode 7: Ben Shen
… for Industrial Microbiology Natural Products conference that was held last January. Ben was the organizing chair of … why I’m very excited. I think, among many, many major discoveries since the genomic revolution, to me, as a … And most owners of the strain, they always prefer to keep it the strain for themselves. So, one of the goals that …
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Natural Prodcast Episode 9: Roger Linington
SIMB, or the Society for Industrial Microbiology conference that took place in January this year in San Diego, and that … to say thanks to everyone listening. Our download numbers keep going up, which continues to surprise and amuse me. I … It was designed to ensure equitable benefit sharing if any discoveries were made that were of value to the host …
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