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Protocols
Find protocols provided by JGI and the JGI user community below … molecular-weight DNA extraction and RNA preparation.  JGI sample QC protocols can be found here . DNA Extraction Protocols: … …
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How to Submit Sequencing Samples
… . … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and … below will assist you in verifying that all required information is included. Please retain your carrier’s … the blue “reports” button on the right side. The Project Overview report includes project-level metadata such as the …
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Project Management Office
… a number of activities to facilitate world-class science. PMO works with users, JGI scientists and technical staff to … step. … Please review our FAQ in advance of contacting the PMO office.  … Before work can start on any approved proposal – including the submission of samples for sequencing, or the submission of sequencing data …
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FICUS Overview
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Frequently Asked Questions: Project Management
… contacts ” page in your account. Use the form to update all information except email address. To update your email … sequencing. … No. However, the JGI does maintain a list of protocols, found in our HERE (TK) , used successfully by … shipments can be found in the Sequencing Sample Overview file in our HERE (TK) .  Note: the JGI does not …
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Data Policy
Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … Science (BERSS), or Bioenergy Research Centers (BRCs). Overview … Embargo : A period in which data is not publicly … Data from projects for which JGI has not yet received samples as of Sep 30, 2021 are subject to a 2-year embargo …
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Synthesis
… — to make them more user accessible Synthetic Biology Informatics Group : a team that develops data science tools … and novel automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis … … Plus: SynTrack and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well …
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Scientific Advisory Committee
… by the JGI Director to provide a scientific and technical overview of the JGI. The SAC is chartered to render advice, … sequencing, new sequencing technologies, and related informatics; overview of the scientific programs at the JGI; and overview …
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User Support
… are notified that their proposal has been accepted, the PMO will assist with initiation of work through: … of Work (project roadmap) Users must prepare Materials (Samples) for Submission before they can receive an emailed … Manager will, as needed: Provide additional requested information or resources to users Coordinate meetings with …
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Frequently Asked Questions: Proposal Submission
… to see specific details including project types supported, sample/capacity limits, and instructions.  Many of the … our Genome Insider podcast.  You can also contact jgi-jira+pmo[email protected] for advice!      … The deliverables can … review and is selected, we will provide you with the information you need for the grant. … Yes. You should use it …
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Natural Prodcast Episode 18: A CSP Primer
Programs tab at the top. From there you’ll be able to find info about the CSP, FICUS, New Investigator and Functional … on that, but maybe you’d want to give a really high level overview of what that looks like? TANJA WOYKE: Yeah. So we … you have questions about project relevance or experimental protocols, contact Deputy for User Programs, Tanja Woyke , …
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis and pathway … product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw data … clones if low number of variants, or pool of variants with sample sequencing to predict the number of successful …
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