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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, … of microbes. Studying bacteria and archaea, including those associated with microeukaryotes, enhances our understanding … provides high-quality, large-scale genomic data to advance microbial research that drives sustainable solutions in …
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Plant Microbial Interactions Group
… that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic … is the modulation of their bacterial host to colonize plant roots, as with Arabidopsis thaliana. Using a coupled …
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Metagenome Program
… bacteria, archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses several experimental approaches to assess microbial activity across ecosystems.  By studying microbial …
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New Lineages of Life Group
… learning to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to … Cataloging Earth's microbial lineages through advanced genomic techniques and … reveal new lineages and functional capabilities in the microbial world. …
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Partnerships: Adopt-A-Genome
… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will … by the Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the JGI though … up-to-speed with some of the latest developments in microbial genomics, metagenomics, and computational biology, …
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How to Submit Sequencing Samples
… includes instructions on accessing sample-level reports and tracking statuses.  Please follow the steps outlined below. … information is included. Please retain your carrier’s tracking information. JGI Shipping Checklist International … Sample Tracking …
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Metabolomics Program
… exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … analysis, JGI scientists are able to link metabolic activity with gene expression, providing deeper insights … systems can provide novel insights into the impact of microbial symbionts and their hosts on ecosystems.   …
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Single Cell Research Group
… from candidate phyla, major branches in the phylogenetic tree without cultivated representatives. The “Great … in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … valuable reference genomes in under-populated areas of the tree of life, as reference genomes are critical to serve as …
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Environmental Genomics Group
… of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … within those genomes. Our aim is to more fully capture microbial and viral diversity, leading to a better understanding of microbial communities and ecosystem function.  The …
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Natural Prodcast Episode 17: Cassandra Quave
… So I was always an outdoorsy kid – I was often found in a tree or covered in dirt playing with my dog in the yard. But … in bacteria as well. Yeah. DAN UDWARY: Yeah. Yeah, common root.  ALISON TAKEMURA: And so is that how your ethnobotany … that we found, indeed, that both formulations had some antimicrobial properties. But the one that was used in …
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Synthesis
… Plus: SynTrack and associated tools, which track samples through the JGI’s …
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User Support
… IMG , GOLD and others for data annotation and submission Tracking, monitoring and expediting laboratory processing … tool tutorials, as needed Upon completion of all work associated with your proposal, your Project Manager will …
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