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Plant Program
With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to … improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is … accessions) and protocols (transformation, crossing, mutagenesis) are available to the community.   … EcoFABs link …
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Plant Program User Advisory Committee
The Plant Program Advisory Committee is chartered to offer … on the effective management and strategic objectives of the plant program. The committee serves as the program's key …
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Natural Prodcast Episode 10: A Primer on Genome Mining
UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … in order to challenge or kill off competition, right? And plants do the same sorts of things. And then, bacteria often … if an order is uncultured (blue; represented only by metagenome-assembled genomes or MAGs) or cultured (gray; …
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Natural Prodcast Episode 17: Cassandra Quave
… curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … of ground – her book, bioprospecting vs biopiracy, early stage drug discovery in general, and a possible data-driven … it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of …
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Project Management Office
Pennacchio PMO Lead, Metabolomics Program Kerrie Barry Plant and Algal Genomics Natasha Brown Supply Chain Manager Tijana Glavina del Rio Metagenomics         Danielle Graham Microbial Program Nancy …
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … and characterizing microbial diversity, work in the Metagenome Program uses several experimental approaches to …
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DNA Synthesis Program
… the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on discovering and … decomposition, CO2 fixation, redox reactions, and plant metabolite biosynthesis, synthesizing and … of fungi and community annotation. … Phytozome is the JGI's Plant Comparative Genomics portal. Families of related genes …
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Metabolomics Program
… them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With advanced mass … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome …
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Products
Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript sequence … contigs. Assembly, annotation ( IMG ) Depends on project Plant and Algal Standard Draft Whole genome shotgun …
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Partnerships Development Team
… atmospheric gas mitigation properties of multiple rice plant growth promotion technologies using methanotrophs. … … help drive discoveries that will render new economic advantages for farmers concerned with improving sustainable soil … technology called chassis-independent recombinase-assisted genome engineering (CRAGE), which offers single-step genomic …
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Natural Prodcast Episode 14: Nigel Mouncey
… off today with my interview with the Director of the Joint Genome Institute and head of the Secondary Metabolites … in an obvious way. NIGEL MOUNCEY: We did a little bit of metagenome screening work and did find related clusters. But … with a contract manufacturer to actually have them build a plant for production and fermentation and transfer that …
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JGI Portals
… to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all …
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