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The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our … a combination of experimental workflows and computational analysis, JGI scientists are able to link metabolic activity …

… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … artificial Intelligent/machine learning approaches in data analysis and interpretation is creating new opportunities … data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … terrestrial world. Research Team    … Plant microbiomes hold the amazing ability to influence plant … construct a bioenergy plant single-cell atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … approaches to assess microbial activity across ecosystems.  By studying microbial communities and their … tools and visualization resources that support user analysis of biogeochemically-relevant pathways, enabling …

… focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … addressing key environmental challenges, such as improving soil health, carbon sequestration and bioeconomy …

JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the … in studies of complex biological and environmental systems. We optimize our service to the community through … DNA design and synthesis, metabolomics and computational analysis that enable systems-based scientific approaches to …

… functional genome annotation, improves understanding of the role small molecules play in diverse biological systems, sheds light on nutrient cycling, and leads to the … based methods in combination with advanced computational analysis.   Overview of metabolomics products At JGI, …

The User Support Analysis group provides computational analysis for new … epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product types, to the …

… … Information on Software Looking for information on our software, including BBTools ? Click to find that on our …

… that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … public datasets.  … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) supports the annotation, …

… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is advancing … biology to ecosystem processes through model laboratory ecosystems. They are small plastic growth chambers where plants …

See below for examples of successful Letters of Intent to our Community Science … from the PIs who drafted them.  … Elucidating Sphagnum microbiome genetic interactions for improved growth at … … Adaptive strategies in a cosmopolitan and abundant soil bacterium: genetic microdiversity or core metabolic …