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Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two …

Lake Mendota sits right next to the University of Wisconsin, … lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater ecosystem works.  …

This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two episodes, we’ve covered the …

Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since … about microbiology and natural products from the Great Salt Lake, and you’re going to learn, like me, what a “haboob” … in this hypersaline environment, which can range from 8% to 28% salinity. We have toxic metals, so these concentrations …

… work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … Adopt-a-Genome has:  11 CSU educators working with the JGI 120 genomes claimed (or about one per student) Seven … analysis, visualization and interpretation using public datasets.  … The Integrated Microbial Genomes & Microbiomes …

… functional genome annotation, improves understanding of the role small molecules play in diverse biological … sheds light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform … as well as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified using …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … The program aims to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by … microbial lifestyles using AI-driven analysis of such datasets. The program also collaborates with isolate …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association between the … patterns in root cross-sections. … 10.1038/s41579-020-0381-4 10.1038/s41396-020-0637-z …

Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between … processes for the first time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well … data set will help identify how different elements of the ecosystem interact and respond to changes in the …

Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint … the convention went– since the protocol went into force in 2014. There’s now a website that has a lot of resources that … in a Frontiers review paper. We tried to send this whole mega thing to Chemical Reviews , and they’re like, what? No, …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … (Alignment fraction, AF) have been computed for nearly 28,000 bacterial and archaeal genomes. By clustering genomes … and distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to …