Search

… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics … analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The …

… material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … The “Great Plate-Count Anomaly” first described by Stanley and Konopa in 1985, which highlights our skewed … phylogenetic relationships and to provide valuable reference genomes in under-populated areas of the tree of …

… more about Tiny Earth and the JGI’s role in the project by watching Amanda Hurley’s presentation from the 2019 JGI … Marc was the Head of Experimental Genomics there, before he decided to leave for graduate school and pursue his … MARC: Well, I’m really biased and I like the bugs in the microbiome. So a lot of my work is as focused on insects As …

… and scientists of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first … paper published in Nature Biotechnology, titled ‘A genomic catalog of Earth’s microbiomes’ . (Citation: Nayfach S et al. A Genomic Catalog … and other learning resources. Relevant links  The “Genomic Catalog of Earth’s Microbiomes” paper is here . Read the …

… approaches to assess microbial activity across ecosystems.  By studying microbial communities and their interactions, … diversity and metabolic potential, with implications for energy production, environmental sustainability, and many other applications. By understanding how microbes contribute to ecosystem …

… to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … to the  MassIVE repository . Not all products are available for all proposal calls.   Please review the call language … demand, and costs of current offerings in the JGI product catalog. As a result certain products have been  …

… coding potential to find novel functions that may impact microbiome structure and biogeochemical cycles. Research … insights into viral evolution and complexity, and encode for a treasure trove full of novel genes ready to be tapped for downstream applications. …

… inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as … and inter-organismal interactions, which are critical for advancing sustainable solutions in agriculture, energy … datasets, particularly for uncultivated microorganisms, by sequencing large populations of bacteria and archaea in …

… States. They also provided multiple access points to the information. The team harnessed a community-science program to … available, river-focused microbial resource that provides information at multiple scales from genes to the community … and agriculture. Understanding the compositions of river microbiomes—who the core microbes are and what they do—can …

… however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at … involved in virus:host interaction and host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts … our understanding of the impacts of these viruses on microbiome processes is still limited. One key challenge is …

… staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and … as the DOE Systems Biology Knowledgebase and the National Microbiome Data Collective.    … biotechnology through analyzing and harnessing genomic information from plants, fungi, algae, non-medical microbes, …

… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and … interactions, evolution, and adaptation, ultimately informing strategies for environmental monitoring, …