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… by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s also a … over time. And yeah, I mean, that was let’s see, maybe 5,6,7 years ago, and I’ve – I haven’t looked back. ALISON: … that’s really popped up at funding agencies and the popular news recently because a lot of soldiers in the Iraq and …

… out where I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … of Earth’s Microbiomes. Nature  Biotechnology . 2020 Nov 9. doi: 10.1038/s41587-020-0718-6) DAN UDWARY: Yeah, I think … Microbiomes” paper is here . Read the associated JGI news release here . Software we discussed, used for genome …

… list available at Google Scholar. Dutkiewicz, Z. et al (2025) “ Proposal of Patescibacterium danicum gen. nov., sp. … phyl. nov .”  ISME Communications , Volume 5 Issue 1. Wittmers, F. et al (2024) “ Non-photosynthetic … conclusions .”  Nature Communications Volume 15 Article 9873. Buscaglia, M. et all (2024) “ Adaptation strategies of …

… wasn’t an MRSA strain at the time because that was in the 1980s. I’m showing my age now. So early 1980s we didn’t have– … than HIV/AIDS does every year in the US and it has since 2005 even though we technically have a number of different … plants and bringing them back is not your jam, the good news is there’s this amazing resource that can be provided …

… And you have these different types of particulate like 2.5, 10 PPMs and just the size of the particle and how far … WINTER: Wow. DAN UDWARY: And I think we’ve got another 200,000 or 300,000 bacteria to go in before we go to the 1.0 … there a way to do that? DAN UDWARY: Well, so there’s good news and bad news on that. So one of the things that we’re …

… because they’re so reactive. BEN: …going back to the 1950s. But the structure of which was not known until the … So I wanted to ask you also about – because you were in the news recently – TSRI has acquired the Pfizer strain … at several natural product enediyne structures, Ben’s 2015 paper on genome mining for enediynes is one of my …

… never forced it on me, but we always had these scientific news magazines lying around at home. And I would just pick … was bioengineering bio-process R&D, BBRD, a group of about 75 people. So our biggest project was the spinosyn family of … a high throughput screening platform where we’d look at 10,000, 15,000, 20,000 mutants a week. We started doing a whole …

… APS, BioSANS typically has an acceptance rate of 12 to 15%, mainly due to resource limitations with our partner … Across the whole center our acceptance rate is close to 75%, but then depending on which capabilities are being …

… Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And … ALISON TAKEMURA: And this is Paul Jensen in the early 2000s? Late 2000s? NADINE ZIEMERT: No, yeah, 2010. ALISON …

… Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in the group include the sequencing and … dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. (2023) Identification of mobile …

… first started out the natural product community was almost 100% bacterial. Only people working in mycotoxins worked with … teach microbiology – “microbiology” – it’s almost 95% bacteria! What happened to all the other microbes? So …