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DNA Synthesis Program
These advancements contribute to the development of new biofuels and sustainable biochemicals. The DNA Synthesis … … The JGI has developed a suite of build-optimization software tools to streamline the design-build transition in … CRISPR applications. … Synthesis Capabilities & Offerings … BOOST … Integrated Microbial Genomes and Microbiomes … …
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Synthesis
Group : a research & development group and focused on new technologies and optimizing tools — including strain … Check out our organism-agnostic CRISPR gRNA design tool  … BOOST provides a suite of tools to automate sequence design … … BOOST … Synthesis Platform Lead … More Resources … Software Engineers in the Synthetic Biology Informatics …
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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, please include … GenBank File There are several easy-to-use open source tools for converting DNA sequence files into well-formed …
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics … gRNA-SeqRET , an organism-agnostic CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, …
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CSP New Investigator Call
The CSP New Investigator Call is for investigators and research … the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals … about the appropriateness of projects or experimental design, please contact Tanja Woyke, Deputy for User …
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Natural Prodcast Episode 9: Roger Linington
… if we’re finding an audience outside of just us. If you’re new to natural products science, please let me know! I’m … we’re now very much – we’re interested in how we can build tools which will let us see the whole landscape of natural … and new developments in mass spectrometry hardware, software, new developments in NMR methods, ultra fast …
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Partnerships: Adopt-A-Genome
… in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of … Reach the next generation of genome scientists and recruit new talent for biosciences.  Adopt-a-Genome has:  11 CSU … insights from sequence data, employing IMG data and tools for comparative analysis, visualization and …
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Secondary Metabolites Program
… and their roles in the environment, can unlock new avenues for bio-based products and bioenergy crop … support users, our efforts include developing computational tools for predicting biosynthetic gene clusters (BGCs), … are provided to display annotation data from many common software tools, and from many users, so that the data is …
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, DNA … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … requests not on this list, or to discuss experimental design for a proposal, we encourage you to contact the …
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Institutional User Agreements
…  The recent updates were approved by the DOE to address the DNA Synthesis program. When fully executed, the new User Agreement will replace the active version. For … required. NOTE:  If a PI changes academic institutions or a new PI is named during the performance period, your Project …
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Natural Prodcast Episode 11: Marnix Medema
… last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the … of biosynthetic gene clusters. So it’s actually a software tool and it takes as input – it takes genome …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… analogy to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to … little vague to me. What do you mean by putting a bunch of tools in one package? DAN UDWARY: Oh, sure. So if I wanted … you see sometimes. So pretty recently, Merck put out some software called DeepBGC , which is a machine learning tool …
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