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… strong constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … and host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The …

… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying … provides high-quality, large-scale genomic data to advance microbial research that drives sustainable solutions in …

… including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered …

… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses several experimental approaches to assess microbial activity across ecosystems.  By studying microbial …

… data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find novel functions that may impact microbiome structure …

… focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from … of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … genomes. Our aim is to more fully capture microbial and viral diversity, leading to a better understanding of …

… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological … exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With advanced mass … cycling, plant-microbe interactions, and environmental responses. The program employs advanced mass …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will … by the Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the JGI though …

… now I’m working on this the afternoon of the day I’m due to release it, which is not ideal for me keeping myself on … to predict or just understand better the language of microbial cell-cell communication. And he told us about his … It’s anthropomorphizing a little bit here, but it allows us to think about what the quote unquote “purpose” is …

… pathway engineering Mass spectrometry based metabolomics Below is a table of standard product offerings, including a … as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided … below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is complete. Raw …

… See below for examples of successful Letters of Intent to our … Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and … Linking lignin engineering to drought stress resilience: RNA-seq and metabolomic …

… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I … we didn’t even sequence the whole genome. We just did a low-resolution shotgun pass where we sequenced 500 runs. And … of thought with that. So some people are interested in cave microbial– people are interested in the more extreme …