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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in … research.  These efforts include exploration of the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of …
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses several …
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Plant-Microbial Interactions Group
Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better …
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Natural Prodcast Episode 10: A Primer on Genome Mining
DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … ALISON TAKEMURA: I know that it’s looking in the genome for genetic elements of interest, you know, something like … Yeah, bacteria sound like a good place, to me, to look for diversity because there are so many bacteria, because it is …
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Metabolomics Program
Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding … of high performance plants and microbes, and understanding microbiome interactions. The  insights derived are crucial …
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Mission
… by the Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, … … Microbes constitute the largest reservoir of biodiversity and functional versatility on Earth. Their … are at the core of many environmental processes, and the genetic makeup of microbial species and communities forms …
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … think so. I think that Townsend lab culture had a lot of its own toughness to it in various different ways. So, the … with animal metabolism itself, and it’s really amazing what diversity there is in animals. I think, even despite the …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … by our research team surveying the genomic and phenotypic diversity across the natural range of switchgrass found that … of switchgrass and is a key component in providing genetic variation available for selection to improve biofuel …
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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as … the JGI partners with a number of facilities.  … Through its partnership with NERSC and the DOE Energy Sciences … will be the development of tools and infrastructure for microbiome data science, and the development of new …
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New Lineages of Life Group
… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … Schulz, C Abergel, T Woyke (2022) Giant virus biology and diversity in the era of genome-resolved metagenomics. Nature … 578 (7795), 432-436 Schulz et al. (2020) Advantages and limits of metagenomic assembly and binning of a giant virus. …
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Natural Prodcast Episode 16: Marcy Balunas
Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it going?  DAN: Good. How are you?  MARCY: Am fine. I live in a … postdoc Panama as part of the international cooperative biodiversity group (ICBG) based in Panama and was dual there … is usually going to be through synthetic biology or genetic engineering. But I think from what I’ve read you’ve …
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Secondary Metabolites Program
… growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient … program aims to tap into the largely unexplored biochemical diversity within secondary metabolites, expanding their … uncover these hidden biochemical resources by exploring the genetic pathways responsible for their synthesis. The …
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