Search

… FY 2026 DOE Metrics Sequencing Quarter Total Bases … metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one new computationally enabled approach … are producing data.   FY05-07 Sequencing Goals and Results Fiscal Year Sequence (GB) Operating Hours Targets Actual* …

… of this policy) produced through all user projects accepted FY22 and later through the Community Science Program (CSP), … or metabolomics projects: data are subject to a  one-year embargo .  For each data or analysis product (raw or … For DNA synthesis projects: data are subject to a  two-year embargo starting at construct or strain delivery.  …

… welcome back to Natural Prodcast, and this will be episode 11. This continues our little sprint on genome mining. In … of genome mining, which is using DNA sequence to identify and interpret biosynthetic, secondary metabolism … that, I wanted to tell a quick story. Looking back, the year was probably 2010, 2011, I was a, uh- actually, I’ve …

… on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated … builds on the framework of Hungate and colleagues, to quantify heavy isotope incorporation into DNA by active microbial … With the development of high-throughput SIP (Nuccio et al. 2022) and terabase-scale metagenome combined assemblies …

… Roux S. (2024) MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes. mSystems 9:e00888-24. https://doi.org/10.1128/msystems.00888-24 Coclet, C., Sorensen, P.O., Karaoz, … Neri U., Wolf, Y., Roux S., Camargo A.P., et al. (2022) Expansion of the global RNA virome reveals diverse …

… letters of intent and submissions at the bottom of the page.  … view the proposal templates, go to the proposal submission page , login using your JGI account (create one here if you … Release Policy. Learn more on our Data Policy & Support page.  … Europass format. In general, CVs should not exceed three pages. …

… been an active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. Terms are 3 years … Anyone can nominate, but only users active in the last fiscal year can vote or be elected. Voting is electronic and …

… science, and all online and free. We had to cancel last year’s event due to COVID, but this year we’re holding the … express clusters metabolomics to be able to actually identify and possibly even quantify the products coming from these … 30 to September 1st. The link is found all over JGI’s web pages.  DAN: And I will put it in the show notes along with …

… with geNomad. Nat Biotechnol . Epub. Neri U. et al. (2022) Expansion of the global RNA virome reveals diverse … the human gut microbiome. Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and host … benchmark of metagenomics software. Nature Methods  14(11):1063-1071 Bowers RM, et al. (2017) Minimum information …

… show notes, which you can always access through JGI’s webpage at  naturalprodcast.com , along with transcripts and … program. And I’m a scientist here. And have been for 18 years. (LAUGHS) DAN UDWARY: All right. Easy start. What does … CSP call. That call is supposed to come out in early next year. Same for the FICUS, we’re working with EMSL and DOE …

… modules Currently 206 genomes have been selected with 11 published manuscripts published to-date Testimonials: … Resour Announc 0:e00891-25. https://doi.org/10.1128/mra.00891-25 . B. Christenson, I. Nouioui, C. Daum, M. … R. Seshadri & N. Jue. Whole genome sequence of the denitrifying thermophile Geobacillus thermodenitrificans subsp. …

… FY2025 Spending Profile The JGI is funded primarily by the …