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New Lineages of Life Group
… and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find novel functions that may impact microbiome structure … an expanded complement of translation system components. Science, 356 (6333), 82-85 Schulz et al. (2016) A …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) … hours.   FY 2024 DOE Metrics There were 2,456 unique* JGI users in FY2024 , which includes Principal Investigators … available hours. Other DOE Quarterly Metrics Q1 – Report on new computational developments for improving microbial, …
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Fungal & Algal Program
The program’s fungal genomics research explores new metabolic processes and enzymes that can be applied in … genomes to support both basic research and applied science. By advancing fungal and algal genomics, the program … an international research team in collaboration with the JGI. Conserved Fungal Genes of Unknown Function offer a …
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Single Cell Research Group
… first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial metabolism … Director of Product and Market Development, Twist Bioscience Scott Clingenpeel: Industrial Hygienist, Berkeley … (2017). Woyke T . & Rubin E.M. Evolution. Searching for new branches on the tree of life. Science. 346:698-9 (2014). …
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Plant Program
With collaborative user projects, the JGI’s Plant Program delves into the natural world’s … discussion with the JGI Plant Genome Advisory Committee and DOE, designating a set of JGI plant genomes that are the most important to DOE mission and plant science. These species form the basis of plant research in …
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Microbiome Data Science Team
… approaches in data analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses on … include exploration of the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of …
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Natural Prodcast Episode 10: A Primer on Genome Mining
Natural Prodcast, a podcast about natural products and the science and scientists of secondary metabolism. Welcome back … to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … genome mining is, if I want to explain that to someone who doesn’t know much about genetics or anything else, science …
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Science Programs
The JGI’s Science Programs offer support to users and their research … approaches for and with users, and create computational tools and resources for them. Their concerted efforts help … the JGI’s impact in advancing both user science and the DOE science mission. Prospective users are encouraged to …
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Community Science Program
The Community Science Program (CSP) provides the scientific community at … sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the DOE aims to …
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Natural Prodcast Episode 17: Cassandra Quave
… in the School of Medicine and College of Arts and Sciences. She’s an ethnobotanist and the herbarium curator … people aspects of things, because a lot of what we do at JGI in terms of the sequencing that we do is very … And just because you do a field study in a location doesn’t mean that you’re going to have this massive economic …
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Partnerships Development Team
… was established in part to help better-connect industry to JGI resources, as well as target academic, governmental and … Symbiotics is partnering with the JGI and Berkeley Lab Biosciences Area to quantify atmospheric gas mitigation … Office (IPO) and read the Guide to Partnering with DOE’s National Laboratories . … Recent Partnerships … The …
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Natural Prodcast Episode 14: Nigel Mouncey
Genome Institute and head of the Secondary Metabolites Science Program at JGI, and also my boss, Nigel Mouncey. I got him on to talk … check it out. You can get more info at usermeeting.jgi.doe.gov . And I’ll be sure I put that link in the show …
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