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… of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … Exploring the fascinating world of giant viruses, which challenge our understanding of viral … research focuses on discovering and characterizing giant viruses, which possess genomes and particle sizes that rival …

… however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at … of ecological and evolutionary parameters driving virus:host dynamics in environmental microbial communities. … characterization of molecular mechanisms involved in virus:host interaction and host cell take-over by viruses, …

… and bioeconomy applications. The program provides high-quality, large-scale genomic data to advance microbial … with microeukaryotes. The program also studies giant viruses. Key research areas include terrestrial … and ecosystem management. The program aims to generate high-quality genomic datasets, particularly for uncultivated …

… CheckV can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … effort to develop guidelines and best practices for defining virus data quality. Summary Characterizing viral … Datasets …

… symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are … and complex ecosystem that includes bacteria, fungi, viruses. Resident viruses can be found in a myriad of bacterial strains, … atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association between the …

… ensure U.S. energy dominance by integrating supercomputers, datasets and AI agents to solve key national challenges. The … generator, the JGI has a key role to play in providing high-quality, structured and curated data to support AI …

… DOE mission-oriented research and contributing validated datasets to further gene function research. The  Open Green … Genomes (OGG) project seeks to develop comparative high quality genomes and annotations across the plant kingdom to … to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of genes within …

… ( GEBA-type strains project ), the delineation of host-virus interactions, the exploration of the functional dark … S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … 6(7):960-970. Nayfach S, et al. (2021) CheckV assesses the quality and completeness of metagenome-assembled viral …

… archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and … and microbial interactions, including microbe-microbe and virus-microbe interactions, over ecological and evolutionary … microbial lineages. Charting viral ‘dark matter’:   Viruses are abundant in the biosphere and influence …

… genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct … the integration and comparison of thousands of metagenomic datasets, to enable our users to identify patterns and …

… using long-read sequencing. Exact library types and quality of finished product depend on genome. Selected … Depends on project Microbial Minimal Draft, Isolate Draft quality microbial assembly of short-read sequence data, many … ) 108/161 Viral Enrichment Draft quality assembly from virus pools/plaques obtained from a single host, many …

… analysis, visualization and interpretation using public datasets.  … distribution of prokaryotic microbial genome and microbiome datasets. It includes JGI-sequenced and publicly available datasets encompassing >150,000 isolate genomes, 230,000 …