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The JGI’s Microbial Program focuses on using cutting-edge sequencing, … The program provides high-quality, large-scale genomic data to advance microbial research that drives … cell approaches. This includes linking strain-level genetic variation to ecological niche adaptations.  Single cell …

… … DAN: Welcome back for episode 9 of Natural Prodcast. This … of, actually. DAN:  Absolutely. How do you get started on building a collaborative community like that to do such a … Is it worth doing replicates? What do you do about variations in concentration? How do you design the …

The JGI’s DNA Synthesis Program supports a wide range of projects, from … The program has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical … strain development, requiring cycles of construct design, building, and characterization. In partnership with the …

DAN UDWARY: You’re listening to the Department of Energy … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride … the pieces that attached to the other pieces, and sort of building out the puzzle from there to find that vein of …

The User Support Analysis group provides computational analysis for new … experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of …

Scientists have discovered that the candidate bioenergy feedstock switchgrass has adapted to expand its habitat range. But at … climate resilient switchgrass for bioenergy production. Building on the framework provided by our new switchgrass …

The Metagenome Program uses advanced sequencing technologies to … Metagenome Program combines large-scale, time-series metagenomic data with detailed characterization of model systems … Microbial Genomes and Plasmid Resources … Genomes Online Database … National Microbiome Data Collaborative … …

… … DAN UDWARY: You’re listening to the Department of Energy … him about more recent work like ActDES, which is a curated database of actinobacteria for evolutionary studies, and … I think the important thing to remember is that, thanks to genomics, we now know that it is very hard to find stuff …

Plants are complex organisms that harbor a fantastic diversity … are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including … a bioenergy plant single-cell atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled …

Our data platforms are a key resource for the broader scientific … fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … The JGI Genome Portal provides unified access to all JGI genomic databases and analytical tools for all JGI sequencing …

… … DAN UDWARY: You’re listening to the Department of Energy … protein or the genes that you are analyzing. And then we’re building phylogenies a lot, making phylogenetic trees, and … I think GTDB also started that. But I think taxonomy and genomic data are still kind of a mess. DAN UDWARY: Yeah, …

The Fungal & Algal Program explores the vast diversity of fungi and algae … and biogeochemistry. This research helps translate their genomic potential into practical applications, including … harnesses cutting-edge sequencing technologies and advanced genomic analysis to explore the rich diversity of fungi and …