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… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying soils, … humanity. A major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to create …

… Plants are complex organisms that harbor a fantastic … contribute to a dynamic ecosystem. We are interested in how plants self-organize, influence, and are influenced by … and computational genomics to better understand the plant-associated terrestrial world. Research Team    …

… The Plant Program Advisory Committee is chartered to offer … on the effective management and strategic objectives of the plant program. The committee serves as the program's key …

… computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture microbial and … on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value to improving our …

… I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … in order to challenge or kill off competition, right? And plants do the same sorts of things. And then, bacteria often … mining. So we’re here in California. And gold mining was a big endeavor. And I’m no expert, but the way that I …

… curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … So these are some things that even if you’re not like a big pharma company and you’re just like an assistant … it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of …

… and quality of finished product depend on genome. Selected genomes will be improved based on feasibility and scientific … annotation (single organism). Note: smRNA sequencing is no longer supported. For annotation: de novo assembly. For … contigs. Assembly, annotation ( IMG ) Depends on project Plant and Algal Standard Draft Whole genome shotgun …

… advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … group focuses on Microbiome Data Science and analysis of Big Data. The Research Team   … comparative analysis, mining and visualization of big data. …

… common tools that genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and … and a tool for predicting natural product structures from genomes. And I was writing grants furiously to try to get … called “disease suppression”, where the microbiome of a plant, so the bacteria living on and inside the roots are …

… Pennacchio PMO Lead, Metabolomics Program Kerrie Barry Plant and Algal Genomics Natasha Brown Supply Chain Manager …

… ranging conversation, and we could have gone on for a lot longer than we did, and I can say without reservation that … the JGI Secondary Metabolism Collaboratory , which is the big huge monster thing that’s been keeping me busy for a … BRIAN BACHMANN: That’s right. JACKIE WINTER: And it was a big deal. And you really had– I mean, the whole sequencing …

… means that scientists from all over the world bring us big problems related to energy and the environment – … the special, natural chemical compounds that you find in plants, fungi and bacteria, basically all living things. … a molecular biology term. We recorded the Primer as a much longer conversation, which I cut into more digestable …