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Announcements
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DOE Metrics
…   Actual % Goal   FY 2026 Total   700.0     8,760     Q1 2026 175 313.081 179% 2,208 2,064 95.4% Q2 2026 175 … target is based on 98% of the total available hours.   FY 2024 DOE Metrics There were 2,456 unique* JGI users in FY2024 , which includes Principal Investigators (PIs), Co-PIs, …
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Partnerships: Adopt-A-Genome
… modules Currently 206 genomes have been selected with 11 published manuscripts published to-date Testimonials: … JGI-sequenced and publicly available datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled … subsp. calidus DSM 22629. Microbiol Resour Announc. 2024. 0:e00527-24 . https://doi.org/10.1128/mra.00527-24 K. …
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Institutional User Agreements
… with an active JGI User Agreement older than January 2024 will be required to execute a 2024 version .  The recent updates were approved by the DOE … must be in place.  This is in addition to an active 2024 User Agreement or JGI BDLUA. MATERIAL TRANSFER …
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Environmental Genomics Group
… into DNA by active microbial populations (Hungate et al. 2015). With the development of high-throughput SIP (Nuccio et … strategies across environmental microbiomes. mSystems0:e01744-24. https://doi.org/10.1128/msystems.01744-24 Oliver, … time-series from Lake Mendota. Sci Data 11 , 966 (2024). https://doi.org/10.1038/s41597-024-03826-8 Nayfach, …
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Viral Genomics Group
… Coclet C, Camargo AP, Roux S. (2024) MVP: a modular viromics pipeline to identify, filter, … from metagenomes. mSystems 9:e00888-24. https://doi.org/10.1128/msystems.00888-24 Coclet, C., Sorensen, P.O., Karaoz, …
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Natural Prodcast Episode 3: The Primer, Part 3
… is Dan again, and you’re about to listen to the 3rd and final part of Natural Prodcast’s “Primer” episodes. This IS … want to go back and listen to the first two parts ( part 1 is here and part 2 is here ) so you understand what’s … effects is it causing? That’s a very long process. And then finally, if all of that still works, and you have a good …
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JGI announces final round of 2022 Functional Genomics awardees
… of gene and genome function.  Below find a list of the final six researchers accepted for 2022. Proposals are accepted year-round; the next deadline is July 31. You can learn more about our Community Science Program …
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New Lineages of Life Group
… phyl. nov .”  ISME Communications , Volume 5 Issue 1. Wittmers, F. et al (2024) “ Non-photosynthetic lineages sibling to Cyanobacteria … Issue 22. Krinos, A.I., Mars Brisbin, M., Hu, S.K. et al. (2024) “ Missing microbial eukaryotes and misleading …
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Operating Expenses
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JGI announces 2024 New Investigator portfolio
… a list of researchers whose proposals were accepted for 2024. Harnessing the JGI’s  resources, these researchers … the next deadline for proposal submission is October 4, 2024, for inclusion in the December 2024 review. You can also find more information about the …
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Microbiome Data Science Team
… global diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of new genes with … RNA virome reveals diverse clades of bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic …
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