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Bioinformatics Analysis Tools for Studying Microbiomes at the DOE Joint Genome Institute
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Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi
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IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
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Insights into convergent evolution of cosexuality in liverworts from the Marchantia quadrata genome
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Targeted genetic manipulation and yeast-like evolutionary genomics in the green alga Auxenochlorella
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Year in Review: JGI’s 2018 Progress Report Available Now
… Reports. Print copies will be available the annual JGI Genomics of Energy & Environment Meeting in San Francisco …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … applied to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & … PacBio? A(nswer):  Regular PacBio typically requires ~ 1.5-10 ㎍. Low-input protocols are continuously improved, but …
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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … the genomes of these viruses and associate them with their microbial hosts. However, assembling viral genomes from …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint …
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Soil virus offers insight into maintaining microorganisms
… to another, which can have a significant impact on the microbial communities within soil. Using metagenomics, scientists can shed light on hidden components, … work was performed on a project award ( https://doi.org/10.46936/cpcy.proj.2021.60161/60000437 ) under the FICUS …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… hybrid event, with guests joining onsite at the Integrative Genomics Building at Lawrence Berkeley National Laboratory … (already known as CRISPR) that came up in her team’s metagenomic  samples . While Banfield continued exploring the … more about Doudna and her latest work at the  Innovative Genomics Institute , or find her lab on Twitter  @Doudna_Lab …
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Trends in Prokaryotic Evolution Revealed by Comparison of Closely Related Bacterial and Archaeal Genomes ▿
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