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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… The  National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open … for User Science” (FICUS) call between the JGI and the  Environmental Molecular Sciences Laboratory (EMSL) , successful … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of actinobacteria Streptomyces is more than just a funny word. The 500 species … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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The More the Merrier: Making the Case for Plant Pan-genomes
… abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many genes after such events, returning their genomes to a diploid state while retaining multiple copies of some …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, … User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). “This represents the largest … are hallmarks of different cell types.” His contribution to the paper also aligns with his DOE  Early Career Research …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… and determination as they came onsite. From data carpentry to science communications, their schedules were filled with … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein Bendall and …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … Nowadays, Session is an Assistant Professor at Binghamton University in New York. He and Rokhsar have  recently … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly … genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … fungi are part of the genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and … mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. …
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Ben Bowen
… discoveries, supporting the DOE’s Biological and Environmental Research user community in their bioenergy and environmental objectives. … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – … State University, Tempe, Chemical Engineering Post-doctoral positions – Arizona State University, Bioengineering & …
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PhycoCosm Tutorial
… more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US …
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The Big Deal About Short Plants
… uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …
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