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Filling in the Plant Tree of Life
What if we understood plants and how they adapt to their ever-changing environments … and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. One project …
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IMG/VR
JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address … soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in … as a reservoir for carbon compounds that plants generate from carbon dioxide they take in. In this way, encouraging …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address … soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in … as a reservoir for carbon compounds that plants generate from carbon dioxide they take in. In this way, encouraging …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings together established and emerging scientists from academia, industry, and government organizations for …
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JGIota: Looking Back at Sequencing for Soybeans
The soybean is a crop that could boost biofuels and fertilize fields. … 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, … threatens this important crop. Hear more about that work from researchers Gary Stacey (University of Missouri), Peter …
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Creating an Energy Market for Miscanthus
What grass is a prized ornamental and a bioenergy plant? Meet … an attractive addition to your garden and a potential fuel for the future. But, to be competitive in the market, both … Miscanthus will need some upgrades. In this episode, hear from scientists working on understanding Miscanthus biology …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two episodes, …
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A Shrubbier Version of Rubber
Right now, our natural rubber comes from just one tree species: Hevea … collaboration with our friends at the HudsonAlpha Institute for Biotechnology.       …
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JGI announces 2023 CSP Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users who need help translating genomic …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Lake Mendota sits right next to the University of Wisconsin, … McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater … next 3 episodes are the story behind that giant assembly from Lake Mendota. In this episode: the software evolution …
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DOE JGI Interns Share Their Summer Experiences
This summer, the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the … analyses at their desks. As part of the DOE JGI’s efforts to promote diversity and inclusion in the sciences, …
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