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Uri Neri
… messenger RNA", and that somewhere in the mess of genetic sequences lurks the next cool virus – if only our code would …
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FICUS Overview
… of Energy Office of Science National User Facilities into their research. In recognition of the increasingly …
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Expanding Virophage Diversity
… increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By … they were able to identify 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  … 89 contigs were considered to be complete genomes, and their discovery has extended the possible virophage genome …
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When “The Blob” Made It Hotter Under the Water
… samples. Genomic DNA extracted from the water samples were sequenced by the U.S. Department of Energy (DOE) Joint … Lab), as part of Hallam’s approved proposal through the Community Science Program . The proposal focuses on … up and down the water column. They recently shared their findings in Communications Biology . They reported …
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You Can Move, But You Can’t Hide
… called geNomad identifies and classifies MGEs based upon their gene content and their genetic sequences. The software was created by researchers under the … receiving excellent feedback from the general research community. It can be  downloaded through NERSC . … The U.S. …
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Emiley Eloe-Fadrosh
… et al. 2023. Cohort-based learning for microbiome research community standards. Nat Microbiol . 8(5):751-753. Nayfach …
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Party in the Rhizosphere
… feasting on the compounds that plants secrete through their roots, creating a lively zone called the rhizosphere. …
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FICUS
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Building Sphagnum Genomic Resources
Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing … being assembled. These resources would provide the research community with the ability to address questions such as …
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JGI-UC Merced Interns Share Their 2021 Experiences
… activities. For some students in the 2021 cohort, this was their first internship experience, while others further … … Functional exploration of Phage Impact on Microbial Root … Cross Species Comparison of Plant Single-cell Transcriptomes of Rice and Arabidopsis Roots … Making Big Data Metagenomic Clustering Scalable … …
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JGI@25: From Life at the Extremes to Editing Genomes
CA. Banfield’s observations of the CRISPRs in her microbial sequences piqued Doudna’s interest. As Doudna noted in her … doi: 10.1038/s41467-017-01408-4. Tyson GW et al. Community structure and metabolism through reconstruction of …
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The More the Merrier: Making the Case for Plant Pan-genomes
… by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, … Context For the study, partly enabled by the JGI’s  Community Science Program , the team generated reference …
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