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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… identified 15 core genes shared across all fungi, and found that some of these genes have moved from the mitochondria … time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public … learning models that predict biological traits from DNA sequences. The study also confirmed that mitochondrial and …
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Fungus Fuels Tree Growth
… in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team found that, unlike pathogenic or mycorrhizal fungi (mutualist symbionts that induce structural changes in plant roots),  M. …
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An Earth Month Look at Sustainability Efforts at the JGI
… in half, relative to its 2015 baseline emissions.  Reaching that goal will mean slashing direct emissions from energy, … as well as embodied emissions. “So these are emissions that were made in creating goods and performing services,” … disposal.  To minimize emissions from the disposal end of that lifecycle, there’s a specific push going on at the JGI …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… springs, an extreme environment with low genetic diversity that would help narrow down potential sources of … which is a much less biased approach to studying nature. That’s the real power of metagenomics,” Hatzenpichler said. “It’s great to collaborate with the JGI because with that, we have a much less biased view into biological …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… Q: In her presentation, Michelle O’Malley said that having constant conversations helped with the proposal … and JGI staff to help you appropriately scope a proposal that will be competitive. Q:  Can you elaborate on the … high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… They can direct you to the right person at each facility that can get your project in the right scope. Q4: What can I … Capacity for the plant growth chamber is limited so that will have to be planned. Q5: Is travel covered by the … there’s no money exchanging hands, travel is not something that any of the user facilities would cover. Q6: How can I …
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Nigel Mouncey
… Mouncey has a long-standing interest in microbial genetics that started with his education and carried forward into his … During his time in industry, Dr. Mouncey directed R&D teams that focused on the discovery, development and … technologies, capabilities at a scale and a complexity that would be very hard for an individual institution to be …
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JGI-TMF Critical Minerals and Materials Call
… one research proposal. The program seeks research proposals that integrate genomics with nanoscale science, accelerating … and developing transformative bio-based technologies that address challenges in the sourcing, recovery, and … to review the JGI’s sample requirements . Samples that are not available in a timely manner will delay …
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A User-Centered Approach to Accessing JGI Data
… create a common set of ‘baseline metadata’ across the files that are submitted by each scientific program,” he said. “If … Public data: datasets associated with completed projects that are eligible for public release, have completed their embargos, and numerous other requirements. Data that passes through a kingdom portal (assemblies + …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… stabilizing the polymerase chain reaction technology that enables researchers to generating thousands to millions of copies of a particular DNA sequence from just a few pieces of DNA. Summary The extreme … thoroughly characterize the archaeal lineage, information that they believe will lend insights into discussions on the …
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Cataloging the Microbes that Manage the Health of River Systems
… first publicly available, river-focused microbial resource that provides information at multiple scales from genes to … health is heavily reliant on the energy and nutrient flows that the microbes in these bodies of water help regulate. … program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established …
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