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… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By … they were able to identify 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  …

… Metabolism   Although there are still a large number of secondary metabolites yet to be discovered and their … expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE …

… sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … Microbiome Data Collaborative ( NMDC ) and the DOE Systems Biology Knowledgebase ( KBase ) — and aims to extend these …

… viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley … collection of UViGs by identifying contiguous viral sequences (“contigs”) from thousands of ecologically diverse …

… survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … JGI researchers was published April 2022 in Cell Chemical Biology . When it comes to insect killer P. luminescens … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …

… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, the design of new experimental approaches to link … B.S. in Microbiology, Université Blaise Pascal, France M.S. in Data …

… 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , … Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which … plant resilience and productivity. The algal genomes sequences are available on the JGI’s  PhycoCosm portal. …

… as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – according to plan but unbeknownst to Ray and most of the rest of the 200-plus Zoom participants. While the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …

… from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the … Amplification to generate enough DNA to put on a sequencer. As previously mentioned, it’s a method that’s … assembly. So while researchers are confident all the DNA sequences came from one cell, including components like …

… just one research proposal. Guest speaker Michelle O’Malley of UC Santa Barbara talked about how her approved FICUS … Collaborations for User Science” (FICUS) program. Letters of Intent are due March 17, 2021. Q&A from the Webinar: … on the proposal call page. Feel free to  reach out to any of them with questions. Q:  Apart from instrumental support, …

… the microbial communities living in the mountaintop lakes of the Sierra Nevada mountains. These lakes are isolated, …

… from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a critical resource — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief Informatics Officer. JGI’s Portals, including Phytozome , IMG , GOLD , …