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New Research Sheds Light on Diversity in the Deep Sea
… and other microorganisms that live there.  Researchers from Portland State University and the University of … Berkeley National Laboratory, contributed metagenomic sequencing to the study as well as  genome analysis, … datasets are available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) portal. The study,  published …
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Frigoriflavimonas asaccharolytica gen. nov., sp. nov., a novel psychrophilic esterase and protease producing bacterium isolated from Antarctica
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QTL Mapping for Pest and Disease Resistance in Cassava and Coincidence of Some QTL with Introgression Regions Derived from Manihot glaziovii
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Linking microbial Sphagnum degradation and acetate mineralization in acidic peat bogs: from global insights to a genome-centric case study
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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Metagenomic Analysis of Subtidal Sediments from Polar and Subpolar Coastal Environments Highlights the Relevance of Anaerobic Hydrocarbon Degradation Processes
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Cultivation of novel Atribacterota from oil well provides new insight into their diversity, ecology, and evolution in anoxic, carbon-rich environments
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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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Characterization of the thermophilic xylanase Fsa02490Xyn from the hyperthermophile Fervidibacter sacchari belonging to glycoside hydrolase family 10
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data … class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant …
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Short sequence motifs, overrepresented in mammalian conserved non-coding sequences
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Katherine Louie
… where she manages metabolomics production for community sequencing projects and heads R&D efforts to expand the … techniques, the platform delivers rich metabolite profiles from diverse biological and environmental samples in support of user science.  Capabilities offered by the platform are a result of Dr. Louie’s establishment of …
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