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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal … plant pathogens (blue) vs saprobes (green). (From Haridas S et al.  Studies in Mycology , 2020.) Using whole …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth … Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on a changing planet. Transcript for Audio   ALISON:  …
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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to encourage and enable …
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JGI Workshop at SIMB NP Meeting
… and their biosynthetic logics to be understood, accessing these untapped metabolic capabilities is often tedious … expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative … The Science Most organisms use oxygen to convert food into energy. However, in environments with little or no …
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Mateus Fiamenghi
Mateus’s research is focusing on the identification and analysis of Mobile Genetic …
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Introducing New Members of the JGI User Executive Committee
… “you-wren”) of the University of Arizona! They join nine other JGI users already serving on the UEC – go here to view the full roster of members. …
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Antonio Camargo
Antonio’s research is focusing on the development of new methods for the identification …
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Graduate Students Get Thesis Research Opportunity at the JGI
Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of Mark Sistrom’s lab at … a remarkable opportunity to launch a pilot project and begin the work of understanding how engineered environments contribute to greenhouse …
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Krishna Palaniappan
Krishna is responsible for the design and maintenance of the Integrated Microbial Genomes (IMG) data warehouse, and integration of genomic and metagenomic data with …
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Jinghua Jenny Huang
Jenny is working on the display and visualization of large amount isolate genomic and metagenomic data stored in Oracle databases, Berkeley DB and files in various formats. …
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Uri Neri
Neri is a computational biologist who spends his days wrangling viral genomes and occasionally remembering to document his code. At JGI, he develops tools for … messenger RNA", and that somewhere in the mess of genetic sequences lurks the next cool virus – if only our code would …
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