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Whole genome sequence, CAZyme repertoire and sugar metabolic model of the phytopathogenic fungus Kretzschmaria zonata GFP 132
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Amplicon sequencing of ice and water phytoplankton and bacterial communities during an extreme winter in a central Canadian great lake
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Nick Everson
… Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the Safety, Finance, Human … the DOE Joint Bioenergy Institute and the Operations Deputy for LBNL’s Biological Systems & Engineering Division. Prior to his … The Deputy of Operations provides oversight and leadership of JGI …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… studies.  This conference is inspired by the vision of standardized fabricated ecosystems (EcoFABs) designed for precise manipulation and reproducible experimentation of … and applying these engineered ecosystems across various biological contexts. The program fosters intimate, dynamic …
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Green Algae Reveal One mRNA Encodes Many Proteins
… a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers … numerous examples of polycistronic expression – in which two or more genes are encoded on a single molecule of mRNA – … research team included scientists at the University of California (UC), Berkeley, UCLA, UC Davis, Brookhaven National …
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated … The Impact Despite great strides in generating genome sequences for members of the microbial world through bulk … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… di-GMP (Guanine Monophosphate) is found in nearly all types of bacteria and interacts with cell signaling networks that control many basic cellular functions. It plays … Ec YcgR, within the Nano-lantern scaffold. They then mined sequence databases for homologous YcgR proteins and chose a …
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Evaluation of inducible promoter–riboswitch constructs for heterologous protein expression in the cyanobacterial species Anabaena sp. PCC 7120
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive machinery The Science To better … in early fungi and discovered genes that are critical for this process. The Impact In the absence of the … with the fungi and bacteria, while the DOE JGI team sequenced and annotated a host genome (Rm ATCC 52813) as …
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Frederik Schulz
… Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of … and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, … discovery pipeline and enrichment metagenomics for terrestrial protists. These approaches enable novel …
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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These … started. Plus, Kalyani Maitra (California State Fresno) and two students, Angela and Mark Soghomonian share what it was like to take on one of these genomes.  …
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Genome sequencing of evolved aspergilli populations reveals robust genomes, transversions in A. flavus, and sexual aberrancy in non-homologous end-joining mutants
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