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High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains of Southern Arizona
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Steven Wilson
… Since 2018, Mr. Wilson has served as the Systems Engineering Group lead.   The group is … project and work order creation and management, automated sequence quality control and automation of … BS in BioEngineering, University of California, Berkeley … Education …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… This is excerpted from the full announcement “ Berkeley Lab Receives Multiple 2021 HPCwire Awards ” on the Berkeley … excited to be able to offer this capability to the JGI user community moving forward and to assemble, for the first time … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… As warm-adapted microbes edge polewards, they’d oust … than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem … RNA transcripts. All sequencing was done through the JGI Community Science Program . Using an ecology metric called …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when … UniProt, exist, are not specific enough for a microbial community like that from a temperate coniferous forest floor … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences …
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High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T
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Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus
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Draft genome sequences of Arthrobacter sp. AZCC_0090 and Mycobacterium sp. AZCC_0083 isolated from oligotrophic subsurface forest soil in the Santa Catalina mountains of Southern Arizona
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Refining the Process of Identifying Algae Biotechnology Candidates
… [subhed -- copy to summary above^ as well ] The Science The recipe for growing … Researchers collaborating across multiple institutions have sequenced and analyzed the genome of an alga that thrives in … expertise at the National Labs to screen, characterize, sequence and then analyze the genomes and multi-omics …
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Graduate Students Get Thesis Research Opportunity at the JGI
… Twice a year, the DOE Office of Science Graduate Student Research … caliber of scientists.” For her project, “Microbial Community Structure and Methane Production in California’s … in coastal mangroves. The work complements an existing JGI Community Science Program proposal from the Baker lab to …
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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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