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JGI Hosts GPU Hackathon in May
… Computing Facility (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … and the code owners will be able to get assistance from mentors and a team to port their code to a new architecture. Proposals are due March 1, 2019 for the …
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Year in Review: JGI’s 2018 Progress Report Available Now
… The latest edition of the JGI Progress Report highlights notable research and scientific collaborations in 2018. The cover is … Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were sequenced by the JGI (isolates here , …
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Fungus Fuels Tree Growth
… start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science … of Florida collected forest samples of poplar and soil from Washington and Oregon. The cuttings included genotypes … in general; the fungus decreased the expression of poplar genes associated with plant defense (e.g. jasmonic acid and …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 Annual … speakers who shared a look back at the JGI’s history, from its beginnings in the sequencing for the Human Genome … Kuhn in his 25th Anniversary presentation. “Those driven by new tools and those driven by new concepts.” Patrinos went …
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JGI-KBase Panel at SACNAS
… Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific … students (and their mentors) how to begin establishing a professional presence through getting credit for any … of a course or internship, and before ever publishing a research article. Speakers will highlight opportunities for …
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Team Science Reveals Important Protein in Poplar
… Described as the “DOE Tree,” poplar is considered one of the  Flagship Plants for the U.S. Department of Energy … Partly enabled by the JGI  Community Science Program New Investigator program , BNL scientists focused on the … and cell wall structure in the poplar plants with help from scientists at the NSLS-II.  These findings lay the …
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Evolution of a multi‐step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer‐binding protein triggers acid‐activated gene expression
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A Synthetic Gene Library Yields a Previously Unknown Glycoside Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β‑Linked GlcNAc Polysaccharides
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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Building Wet and Dry Lab Skills
… and Zyiah Mikes worked with mentors Yi Zhai and John Vogel from the Plant Functional Genomics Group to study … on the plant microbiome. This year, however, there was a new aspect to the project - they also worked with Sharon … project is to determine how mutations in plant transporter genes affect microbiome composition and plant growth. Under …
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Yasuo Yoshikuni
… Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission … of non-model yeasts for production of biofuels and renewable chemicals, developing genome engineering tools for … novel pathways assimilating unique sugar polymers in macroalgae and developing the first microbial platform …
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Frigoriflavimonas asaccharolytica gen. nov., sp. nov., a novel psychrophilic esterase and protease producing bacterium isolated from Antarctica
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