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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes
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Flow cytometric monitoring of bacterioplankton phenotypic diversity predicts high population‐specific feeding rates by invasive dreissenid mussels
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iPHoP: A Matchmaker for Phages and their Hosts
… With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding what … several of these approaches together into the same workflow, then uses a machine-learning model to give its …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee … journal  Annual Review of Biomedical Data Science . The following guest piece was written by Call, a postdoctoral … hydrothermal vents – and computationally identifying which sequences represent viruses that were present in the sample. …
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MGM Workshop at Fisabio Summer School
… Workshop The workshop is addressed to students and professionals of biology, biomedical research, the health sciences and … microbiome. The workshop will train participants in state-of-the-art analytical methods in this area, by means of …
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Supercharging SIP in the Fungal Hyphosphere
… The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … SIP places samples into standardized microwell plates, allowing them to be processed at a larger scale through … and archaea, actively engaging with the fungi — highlighting the hyphosphere as an even more complex and dynamic …
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A Complex Confection Decoded: Sugarcane Reference Genome
… most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … by an international consortium. With the genetic code of sugarcane, researchers were able to map the location of … Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in …
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2024 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … A record number of primary users — 2,456 — had active proposals with us, … 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 Megabases of DNA We processed …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – according to plan but unbeknownst to Ray and … delivered a mask for Ray to wear and a red carnation lei flown in from Maui, care of the Admin Group’s Terri …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Over 40 percent of the cereal crop’s genes respond to drought stress. The … conventional food crops. For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be … exactly water becomes a limiting factor – before or after flowering. For the study, the team grew two sorghum …
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MGM Workshop at Fisabio Summer School 2025
… Register here The workshop is addressed to students and professionals of biology, biomedical research, the health sciences and … microbiome. The workshop will train participants in state-of-the-art analytical methods in this area, by means of …
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