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The Surprising Structure of a Shrub Willow Sex Chromosome
… for the next generation. Understanding the mechanisms by which they reproduce can help guide breeding efforts. For … into males and females, a development conferred by its sex chromosomes. In humans, males are … through the  Community Science Program , using long-read sequencing to assemble the repetitive areas of the complete …
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JGI@25: Strengthening Soybean
… and oil was also the largest plant project completed by the JGI. It has since been cited more than 5,400 times, … a lot of thinking that truck fuel and airplane fuel and things like that are not going to be replaced by electricity … was just like rediscovering genetics, with the evolution of sequencing technologies and the evolution of …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… to activate multiple chemical production pathways. By tracking gene activity and chemical output over time, the … these insights are potentially broadly applicable. The findings hold the potential to accelerate development of … salt triggers this metabolic shift, the team combined RNA sequencing across multiple time points with Cappable-seq, a …
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Mining Metagenomes for Cas Proteins
… DNA (ssDNA). The discovery was made possible by mining the datasets in the Integrated Microbial Genomes … the untapped potential waiting to be unearthed in sequencing and analyzing uncultivated microbes. Summary The … acids (aa) in size, half that of previously known class 2 CRISPR enzymes that are typically 950—1400 aa. They were …
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a … Handling Editor, Journal Experimental Botany, 2022 – present University of Florida MCS Advisory Council, … Kumaran D, Xie M, Fahey A, Santiago K, Hu F, Regulski M, Blaby IK, Ware D, Blaby-Haas CE. (2024) Functional …
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Forming Scientific Connections and Building Community
… having responsibilities. I like the environment that JGI brings and being able to be a part of groundbreaking research is very sentimental to me.” Mentors: Crysten Blaby-Haas & Bikash Shrestha Project: “ Detecting Isotope Bonds … Nandita Nath & W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan Lavenstein …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… plant fibers. But are they both actually doing the job? By analyzing the enzymes present in the complex organic … To do this work, the international scientific team led by Petr Baldrian of the Czech Academy of Sciences first … these difficult potential foodstuffs. The team’s findings also illustrate what’s happening on a spatial scale. …
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Tanja Woyke
… postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her research was the symbiont … metagenomics. Taking on a Research Scientist position in 2007, she switched gears from metagenomics to single-cell … into the Microbial Genomics Program Lead position in 2009 and assumed the Deputy Director of User Program …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… communications, their schedules were filled with trainings that they later reported were incredibly valuable to … Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth Promoting … And we’ve been working on isolating and cultivating and sequencing extremophile protists from a hypersaline alkaline …
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Training the Next Generation of Talent
… Distinguished Graduate Internship Program. Conceived by Wang and Visel, the program challenges UC Merced graduate … for building and maintaining cells through the use of deep-sequencing technologies. The internship program was born out … Internship Program alumni will present their research findings in a special and dedicated session of the QSB Fall …
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JGI@25: From Life at the Extremes to Editing Genomes
… for her work on CRISPR-Cas9, technology described by the Nobel Foundation as having “a revolutionary impact on … recounting of that first – and subsequent – meetings is here .) Working with the JGI, Banfield is a pioneer … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Gut Fungi: Unexpected Source of Novel Chemicals
… to help bolster the bioeconomy. Summary A team led by Michelle O’Malley, a chemical engineer at the University … of California (UC), Santa Barbara, collected the droppings of a sheep and a goat at the Santa Barbara Zoo, and … californiae , and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. …
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