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Methane Makers in Yosemite’s Lakes
They’re a great way to see how climate change affects freshwater ecosystems, and how those ecosystems work. …
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Fast and accurate identification of plasmids and viruses in sequencing data using geNomad
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Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions
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New Microviridae isolated from Sulfitobacter reveals two cosmopolitan subfamilies of single-stranded DNA phages infecting marine and terrestrial Alphaproteobacteria
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
This award recognizes distinguished research achievements that support open data practices, development of standards … and characterize viral diversity, understand the role of viruses in natural ecosystems, and functionally explore … data analysis to better characterize how viruses infect soil microbes and influence how soil ecosystems …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… on and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of … system. The Program aims to better understand the viruses that coexist with humans – the “healthy” human virome - not … collection of UViGs by identifying contiguous viral sequences (“contigs”) from thousands of ecologically diverse …
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Project Management Office
… of sequencing data for synthesis – the DOE requires that all work performed in its User Facilities be covered by …
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Frederik Schulz
… of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, … phylogenomics) and machine learning to find novel functions that may impact microbiome structure and biogeochemical …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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JGI@25: Strengthening Soybean
… in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable … impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program. … first legume species with a published complete draft genome sequence. At the time, the vital global source of both …
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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial protein, researchers have new insights into … of these moving parts are proteins — amino acid structures that harvest light, transport molecules and regulate … of that machine — photosynthesizers’ DNA and RNA. These sequences provide a list of machine parts, and an idea of …
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Partnerships: Myco-Ed
… is a Course-Based Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across … and distribution of fungal genome datasets. It includes JGI-sequenced and publicly available datasets encompassing a … and researchers, facilitating the transition from genomic sequences to biological inference and understanding of …
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