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JGI@25: Strengthening Soybean
… impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program. … first legume species with a published complete draft genome sequence. At the time, the vital global source of both … of seed oils as biofuel. After analyzing the original sequence, Gary Stacey of the University of Missouri said he …
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2024 Progress Report
The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome … 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 Megabases of DNA We processed … culminated in a reference for the complex  sugarcane genome sequence. The JGI  partnered  with synchrotron user …
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Accelerating Metagenomics Discoveries with Deep Learning
… of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural similarities in proteins that low sequence identity may belie. The technology he’s using is … Deep learning algorithms can vectorize faces… … so, why not proteins?         … The U.S. Department of Energy …
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Micro-Scale Applications Group
… access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated … now uses laser microdissection to selectively isolate and sequence microbial aggregates after first imaging with …
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JGI & KBase at PAG XXVII
… integrative biology. Researchers who are applying genomic sequence information to BER-funded activities of plant … will be co-located at Berkeley Lab’s Integrative Genomics Building (IGB). Click here to learn more about this move. …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… so there was quite a bit of resistance to use resources to sequence it,” Patrinos said. After many more meetings and … idea was to put together a ‘Best of the Best’ genome sequence list, which I found utterly frustrating and … Nigel Sussman recently finished at the Integrative Genomics Building, the JGI’s home at Berkeley Lab. Like the mural, …
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JGIota: The Algae Nicknamed ‘Chlamy’
UC Berkeley plant biologist Sabeeha Merchant explains why she works on this alga, how researchers managed to sequence its genome, and what it has to teach us about other …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
Laboratory, and the HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected by a team … and others that preferred the hollows. Those genome sequences showed not only that the sex of a sphagnum plant …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… (Berkeley Lab), has produced a high-quality reference sequence of the complex switchgrass  genome using samples collected at these gardens. Building off this work, researchers at three DOE Bioenergy … many parts of the country also helped the team understand why some switchgrass plants from the Northeast have traits …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… mangrove systems, and he was looking for sulfur-oxidizing symbionts in sulfur-rich mangrove sediments not far from his … large sulfur bacteria have been shown to be hot spots for symbionts,” Woyke said. “Yet the project took us into a very … the bacterial cells on the molecular level. They amplified, sequenced and assembled the genomes. In parallel, Gros’ lab …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… and it has been especially called on in the move to the new building where that was really critical. It takes a really … to grow, Ray oversaw the acquisition and renovation of Building 310, adding the crowning piece of the entire 80,000 square foot, three-building campus at 2800 Mitchell Drive, which was dedicated …
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JGI-USCCN Strain Sequencing Opportunity
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