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Partners
… JGI has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA extractions to support … to datasets, workflows, and tools to seamlessly expand data functionality. Close partnerships with other user facilities …
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A call for caution in the biological interpretation of viral auxiliary metabolic genes
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HaploCharmer: a Snakemake workflow for read-scale haplotype calling adapted to polyploids
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… Microbiome Data Collaborative (NMDC) to produce open metagenomics data. Taking the JGI’s call for large-scale … of sequence. “We are thrilled to support this year’s CSP awardees as they embark on ambitious projects that span … efforts including systems-based approaches to unravel functional capabilities of plants, microbes and microbial …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… switchgrass has adapted to expand its habitat range. But at what cost?  A collaborative team led by researchers at … Switchgrass has multiple naturally occurring ploidy levels, called cytotypes, across the species. These are primarily … noticeably absent (see figure on the right). This pattern challenged the idea that 8X switchgrass was an unremarkable, …
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A Collaboration to Improve Plant Genome Annotations Across Species
… resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the gene … Atlas and PPRD could help with understanding gene functional roles, but the experimental inconsistency makes … keep updating the Gene Atlas with curated datasets from CSP projects and aim to improve plant gene function …
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Tour the IGB
… virtual tour of the IGB, home of the DOE Joint Genome Institute. To navigate virtual tours of each floor, click and drag … 3rd and 4th Floors The JGI mural on the 3rd floor whimsically references dozens of iconic JGI contributions to advancing the frontiers of environmental and energy genomics.  For more information about the science depicted, …
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Virus-Microbe Interactions of Mud Island Mangroves
… student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of his research … worked with the JGI through a Community Science Program (CSP) proposal, and Rambo’s research builds on that. “The … better understand methane cycling in mangrove wetlands in south Texas,” he explained. “In terms of my project, I wanted …
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University of California, Merced Internship Program
… graduate student summer research experience at the JGI, the Genomics Internship Program soon expanded to include … To date, more than 90 UC Merced students have contributed to the research of numerous JGI scientists. Interns say …
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Four Researchers Join JGI User Executive Committee
… Bik is a recipient of the Community Science Program (CSP) New Investigator call. Through membership in the UEC, … His current research focuses on the evolution, ecology, genomics and function of microbes and microbiomes, … community and consider new initiatives in areas such as functional studies (e.g., a functional encyclopedia building …
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How Maize Makes An Antibiotic Cocktail
… Science Program . And the work is part of a  larger CSP Functional Genomics proposal to understand terpene  synthesis and … and P.Z.) for diterpenoids, by a DOE Joint Genome Institute Community Science Program (JGI-CSP) grant (CSP2568 to P.Z., ES and AH), and by a …
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Secondary Metabolites Program
… producing them, and are often involved in defense, nutrient acquisition and communication. Studying how these … The Secondary Metabolites Program offers users extensive genomics, biodesign and metabolomics capabilities to … to explore the synthesis and function of these biologically significant compounds. By expanding the repertoire of …
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