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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after … into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a … Data Collaborative where she leads infrastructure and user-centered design efforts. Dr. Fagnan was on the …
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology … National Microbiome Data Collaborative (NMDC). Prospective users with questions on how to partner with the Metagenome … Vyshenska D, et al. 2023. A standardized quantitative analysis strategy for …
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Partnerships: Myco-Ed
… ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ students 800+ … analysis.  MycoCosm provides data and tools via a graphical user interface, ensuring that no programming knowledge or … is required to perform computational analyses. The Mycocosm user interface is designed for use by mycologists and …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
…   On November 3, 2021, the JGI and the Workforce Development & Education … Completed VFP applications are due on January 12, 2022. Faculty interested in developing proposals with JGI …
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Approved Proposals
… as well as the Facilities Integrating Collaborations for User Science (FICUS) program.  …
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Meeting report: International soil virus conference 2024
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Cultivating Symbiotic Antarctic Microbes
… to that of a free-living organism. First discovered in 2011, Nanohaloarchaea are part of the DPANN (Diapherotrites, … outlined by JGI scientists and their collaborators in 2013. While most DPANN lineages are predicted symbionts, the … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, experimentally demonstrated that …
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Exploring and Thinking Critically about Scientific Problems with JGI Interns
… While summer interns at the JGI from multiple programs had their own goals to achieve, they constantly …
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10 From JGI on the 2019 Highly Cited Researchers List
… categories Microbial Systems research group lead and User Programs Deputy Susannah Tringe, Cross-Field category … from the Genomic Standards Consortium (GSC), and the International Committee on Taxonomy of Viruses to outline …
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First Monoploid Reference Sequence of Sugarcane
… breeding in these crops. For diploid species, sequencing programs generally focus on a genotype with two identical … reference sequence. For the highly polyploid sugarcane, an international team of researchers has successfully assembled … as a reference. The final sugarcane sequence generated is 382 Mb; 25,316 protein-coding gene models were predicted with …
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JGI Advisory Committee
… JGI advisory and executive committees, such as the User Executive Committee, the DNA Synthesis Science User Advisory Committee, the Fungal and Algal Program User Advisory Committee, the Informatics Advisory Committee, …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… interests in algae and secondary metabolites. A total of 27 proposals have been  approved through the annual  … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … , a free, open source data science platform that allows users to explore data and share reproducible analyses with …
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