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Characterizing Communities: JGI Announces Latest CSP Portfolio
… to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome … efforts appear to be redistributing water availability. By sequencing the millet rhizosphere and endosphere communities … the gene functional networks and regulatory networks of a single strain of  Sinorhizobium meliloti .  S. meliloti is …
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User Support Analysis Group
… epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product types, to the development of automated analysis pipelines for standard sequencing products performed at scale. Our group also …
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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions
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Team Science Reveals Important Protein in Poplar
… disease resistance.  The Impact With increased lignin and iron, engineered poplar can be used to develop bioproducts … Described as the “DOE Tree,” poplar is considered one of the  Flagship Plants for the U.S. Department of Energy … in   iron deficiency response, formation of secondary cell walls (biosynthesis), and integrating molecules that …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements metagenomics studies. The Science … value to the other commonly used culture-independent sequencing approaches including amplicon and metagenomic … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Isolation and sequencing of a single copy of an introgressed chromosome from a complex genome for gene and SNP identification
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Megathrust Earthquake Legacy Linked to Changes in Widespread Potential for Methane and Iron Cycling in Glaciated Wetlands
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Synthesis
… automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, … Software Engineers in the Synthetic Biology Informatics Group …
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User Support
… The JGI Project Management Office carries out a number of activities to facilitate … that will be subject to the DOE JGI’s capabilities for sequencing, synthesis and/or metabolomics. Once materials … issues that may arise. You may monitor the status of your sequencing project at any time by logging on to the Genome …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… early Earth conditions. The Science Through a combination of sequencing tools and techniques applied to samples collected … , the team used metagenome assemblies, transcriptomes and single amplified genomes from samples collected from several … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … metagenome assemblies. Q&A from the Webinar: Input & sequencing Q(uestion): How much DNA is needed for “regular” …
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