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50-year fire legacy regulates soil microbial carbon and nutrient cycling responses to new fire
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Community Science Program
… community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … JGI capabilities, and also requires a Letter of Intent. The New Investigator call is for PIs who have never led a JGI …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … has “significantly advanced our understanding of 1 billion years of evolution in Kingdom Fungi — from phylogenetic … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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New Research Sheds Light on Diversity in the Deep Sea
… get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. … researchers studied microbial communities across five oceanic regions. In doing so, they found a high degree … datasets are available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) portal. The study,  published …
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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … (from environmental metagenome samples) from IMG/VR , a database that is part of the Integrated Microbial Genomes & …
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … but we knew the families,” Kyrpides said. Yet, “almost 20 years of metagenomic data and metagenomic analysis, and … has doubled, but in reality it could be three or four or five or tenfold more out there.” Digging Further into an …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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A roadmap for equitable reuse of public microbiome data
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New and Improved: Eucalyptus Reference is Now Accessible
… for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant advances compared to … Myburg, Wegrzyn, Borevitz) conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 …
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… more than 10 papers, including two Nature Plants publications, in five years, have come out of the JGI-supported project. “The JGI … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for … ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If … and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis …
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