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IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … to virus infections, researchers are using Altiarchaea as a model system to study virus-host interactions. Approximately … and Sebastien Ferreira-Cerca, and sequencing of MSI metagenomes within the Census of Deep Life Sequencing call 2018, …
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UC Merced Interns Reflect on Their JGI Summer Projects
… Over the course of eight weeks this past summer, 10 students from UC Merced worked closely with JGI scientists on research projects that contribute to the larger mission of the U.S. … students worked on ranged far and wide — from implementing new data visualization tools, to using natural language …
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Russulaceae: a new genomic dataset to study ecosystem function and evolutionary diversification of ectomycorrhizal fungi with their tree associates
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to … will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao … Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the plant team …
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Micro-Scale Applications Group
… The Micro-Scale Applications group explores the genetic makeup of … of cutting-edge approaches.  Our group also seeks out new approaches that utilize microfluidics/microdroplet … technology in order to enhance the quality of single-cell genomes and directly link functional information with …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … proposal akin to the Encyclopedia of DNA Elements (ENCODE) project, which is aimed at determining the activity, …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems … Genome Institute has continued its journey to realize our new vision to, “ Lead genomic innovation for a sustainable … processed 13,700 metabolomics samples With our users, 247 publications were published   …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and … researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly … plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. Department of Energy (DOE) …
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Microscopic Algae as New Emerging Models for Studies of Organic Biocrystallization and Vision
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Frederik Schulz
… Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His research … to the JGI user community and supports various user projects in the Microbial Program. In an LDRD-funded … B.Sc. Biochemistry, University of Applied Sciences Mannheim (Germany) M.Sc. Molecular …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … were all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in the … Jeremy Schmutz’s 2023 published work included investigating sphagnum moss and the role the plant’s sex plays in its …
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