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Genome Sequences for Six Rhodanobacter Strains, Isolated from Soils and the Terrestrial Subsurface, with Variable Denitrification Capabilities
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Dominant nitrogen metabolisms of a warm, seasonally anoxic freshwater ecosystem revealed using genome resolved metatranscriptomics
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … right? BEN: Yeah, yeah. Well, we are at [10 to the] minus 12 [Molar concentration]- is sufficient to kill cells. So … technology under one roof. So that really facilitates. The metabolomics, another technology that to, monitor if all …
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A Community Resource for Secondary Metabolite Researchers
… Collaboratory encourages user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most living creatures for energy, growth and reproduction—most … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … we discussed in the primer podcasts ( part 1 here , part 2 here , and part 3 here ), which you should be able to find … in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural products in plants, fungi, and …
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JGI Accepts 17 Proposals for Community Science Program
… Monitoring Inter-Organism Interactions Within Ecosystems Latest … interact with their environment, potentially accelerating soil carbon loss. Orange ribbons mark the heated plots and … She aims to look at the microbial methane cycle in terrestrial geothermal environments. …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … size and structure varied enormously, ranging from just 12 kilobases in Rozella allomycis , an early-diverging … as a resource for AI-driven approaches to predicting fungal metabolic traits from genomic data to understand how …
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Draft Genome Sequence of a Terrestrial Planctomycete, Singulisphaera sp. Strain GP187, Isolated from Forest Soil
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic reprogramming. The … RNA sequencing was done by the JGI, and proteomics and metabolomics analysis and microscopy at EMSL. The team … portion of this research was performed under the Facilities Integrating Collaborations for User Science (FICUS) …
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Metabolic interactions underpinning high methane fluxes across terrestrial freshwater wetlands
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Game On: High School Students Drive Everglades Metagenomics Study
… in Florida to discuss a JGI pilot project involving soil sampling in the Florida Everglades to help train the … abundance of genes involved in environmentally significant metabolic pathways related to methane production, nitrogen … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Structural characterization of a soil viral auxiliary metabolic gene product – a functional chitosanase
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