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Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … much data and a lack of experience, this added a layer of complexity to the project for figuring out how to bring this … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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CSP Large Scale Call
… and predictive biology, modeling and biodesign — questions of relevance to DOE’s Biological and Environmental Research … merit, DOE mission relevance, proposed data usage by the applicant/community, and track record of the applicant. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be …
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Assemblathon 1: A competitive assessment of de novo short read assembly methods
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De novo Nanopore read quality improvement using deep learning
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Counting dots or counting reads? Complementary approaches to estimate virus-to-microbe ratios
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A Genome-Wide Survey of Switchgrass Genome Structure and Organization
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Impact of Harvest on Switchgrass Leaf Microbial Communities
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … or method is being used to integrate the metabolomics and transcriptomic data? A:  We use MAGI. Reference: Erbiligin … samples and test how many they thought would be necessary. Switchgrass has an enormous metabolome, and we wanted to …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … The disease is known more commonly as Sudden Oak Death or by its acronym, SOD. Of the dozens of Phytophthora species, … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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