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A Community Resource for Secondary Metabolite Researchers
… more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … public repository of BGC sequences that come pre-annotated using multiple commonly used sequence analysis tools … Over the years several secondary metabolites databases have been made available to the research community, each offering …
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Zwartia hollandica gen. nov., sp. nov., Jezberella montanilacus gen. nov., sp. nov. and Sheuella amnicola gen. nov., comb. nov., representing the environmental GKS98 (betIII) cluster.
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and other researchers at the Danforth … say, ‘Yeah, there are genes out there that affect this phenotype.’”  Results from A “Massive Amount” of Sequencing  … major question: how to turn a C3 crop into a C4 crop. There should be a master regulator but no one has found it,” …
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JGI@25: Using Team Science to Build Communities Around Data
… the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an interactive … on an online interactive browser – contains the phenotypic records of 8,350 organisms along with 4,355 genomes … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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Data Ecosystem
To expand access to integrated data, improve tools and … ensure cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and … such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to enable …
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Oryzisolibacter propanilivorax gen. nov., sp. nov., a propanil-degrading bacterium
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Proposal of Patescibacterium danicum gen. Nov., sp. nov. in the ubiquitous ultrasmall bacterial phylum Patescibacteriota phyl. Nov
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
For the first time, a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But what trends … do they tend to specialize, infecting just a single host? Another wrinkle in the mystery is that viruses can affect …
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Behind the Paper: Hot Springs Metagenomics
Adapting the graduate research experience amidst a global pandemic   …
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Medium-Chain Fatty Acid Synthesis by “Candidatus Weimeria bifida” gen. nov., sp. nov., and “Candidatus Pseudoramibacter fermentans” sp. nov.
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Learning to Look
… question, “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … DNA genomes and a unique chronic infection cycle. “We’re not sure why we systematically manage to miss them; maybe … analyses led the team to propose that the Inoviridae should be classified as an order of viruses, with six …
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