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Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting
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Complementary Microorganisms in Highly Corrosive Biofilms from an Offshore Oil Production Facility
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JGI@25: From Life at the Extremes to Editing Genomes
… Institute! This is the first science Nobel awarded to two women, with Charpentier and Doudna bringing the total … collection of publicly accessible metagenomic datasets from a wide variety of ecosystems around the world, … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) … of these algorithms, inspired by communication networks found in nature, allows machines to “learn” features. … Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew Tritt of CRD and, independently, Ying …
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Metagenomes from Arctic Soil Microbial Communities from the Barrow Environmental Observatory, Utqiaġvik, AK, USA
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… genomic information using minute quantities of DNA derived from individual environmental cells. The proof of principle … and offered a way for researchers to study the planet’s microbial diversity, much of which remains unknown and … 2012, single cells isolated from the microbes found in the oil plume from Deepwater Horizon oil spill led to a draft …
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Uncovering Novel Genomes from Earth’s Microbiomes
… have uncovered genomes for just a small fraction of Earth’s microbial diversity. Because most microbes cannot be … repository of 52,515 microbial draft genomes generated from environmental samples around the world, expanding the … natural and agricultural soils, human- and animal-host associated, and ocean and other aquatic environments – …
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Metabolomics
… JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and environmental samples using … mass spectrometry (LC-MS) based methods in combination with advanced computational analysis.   Overview of … grow, as well as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified …
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Busting the Unbreakable Lignin
… anaerobic fungi could be used to effectively modify lignin without oxygen and make use of it, it would change the … enzymes highly efficient at making use of those other two components, which requires getting through the lignin.  … Michelle O’Malley’s lab at the University of California at Santa Barbara  recently published a paper in  Nature …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… all fungi, and found that some of these genes have moved from the mitochondria into the nuclear genome over … — supporting the notion that the boundary between these two genomes is not fixed, but continues to shift through … First, they scanned over 26,000 publicly available metagenomes in the JGI's IMG portal for mitochondrial …
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity hotspots Over the past few decades, … regulating global nutrient cycles. The information gained from understanding the interactions between microbes, hosts, … scores representing potential genomes, and nearly 44,000 metagenomes. All of the data are publicly available in …
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Biocorrosive Thermophilic Microbial Communities in Alaskan North Slope Oil Facilities
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