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W. Berkeley Kauffman
… Berkeley is responsible for receiving and processing user samples. His R&D work focuses on the development of new applications utilizing a variety of technologies to … in the areas of metagenomics, single-particle genomics, and metabolic engineering. …
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Four Researchers Join JGI User Executive Committee
… State University, Jonathan Eisen of the University of California, Davis, and Michael Köpke of Lanzatech are the latest … functional encyclopedia building on GEBA) and in microbiome engineering.  Köpke is the Chief Innovation officer at … technology. His research foci have been genomics, metabolic engineering, synthetic biology of non-model …
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Natural Prodcast Episode 22: Alison Narayan
… Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial Microbiology and Biotechnology (SIMB) Natural … enzymes that have those properties. Sometimes we’ll do engineering to improve the physical properties of a protein …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… genome discoveries. Unlocking the intricate details of life’s genetic blueprint has long been a significant … available data, GenomeOcean employs artificial intelligence for cutting-edge genomic research — and is capable of … conducted by JGI users. These datasets include an extensive 25-year study of microbial communities in freshwater …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national … Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and …
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Harnessing Genetic Diversity in Saccharomyces cerevisiae for Fermentation of Xylose in Hydrolysates of Alkaline Hydrogen Peroxide-Pretreated Biomass
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Supercharging Carbohydrate Binding Module Alone Enhances Endocellulase Thermostability, Binding, and Activity on Cellulosic Biomass
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AraR plays a more dominant role than XlnR in plant biomass conversion in Penicillium subrubescens
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Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria
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Multi‐Omics Analyses Reveal Divergent Molecular Mechanisms Underlying Plant Biomass Conversion by Five Fungi
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing alga into a powerful platform for … The relatively small size of its genome also simplifies metabolic modeling and pathway optimization for enhanced … understanding of genome biology, and develop genome-scale engineering technologies to control plants and microbes for …
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Game On: High School Students Drive Everglades Metagenomics Study
… out to many researchers with the hope of getting support for a research project for his class of 18 juniors.  He got … abundance of genes involved in environmentally significant metabolic pathways related to methane production, nitrogen … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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