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Machine learning-based prediction of activity and substrate specificity for OleA enzymes in the thiolase superfamily
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Metabolomics Technology Group
… direct biochemical datasets to improve our understanding of microbial metabolism. Of particular interest is … the distributed and dynamic metabolite networks of environmental microbes and how they transform their environment. Research Team    … For further details, please reach …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
As SIP experiments shed more light on microbial communities than ever before — especially … with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create …
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Events
New Lineages of Life (NeLLi) … Viral EcoGenomics & Applications (VEGA)  …   The JGI is represented at conferences year round; find out where our researchers will …
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Strain Engineering
… little to no genetic tools enabling heterologous expression and functional exploration.  The developed strains represent an … integrated into a taxonomically diverse suite of microbial chassis strains for elevated opportunity for …
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Green Algae Reveal One mRNA Encodes Many Proteins
Gene expression in eukaryotes was long held to be monocistronic – that is, a single gene makes messenger RNA, …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have … and offered a way for researchers to study the planet’s microbial diversity, much of which remains unknown and … of key microbial culprits in carbon fixation in the dark ocean. Combining single cell genomics and synthetic …
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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Understanding Wildfire Recovery, Starting in Soil
… a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees … genes with functions useful for forest recovery, this study sheds light on how microbes contribute as a forest recovers after …
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Cultivating Symbiotic Antarctic Microbes
Nanohaloarchaeota cultures reveal they are symbionts and not free-living organisms. The Science Researchers … thrive in polar ecosystems. The work by Cavicchioli’s team sheds light on the range of archaeal symbiotic lifestyles found in …
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Prokaryote Program User Advisory Committee
… is chartered to offer advice, guidance and counsel on the effective management and strategic objectives of the microbial and metagenome programs and report back to them. … is chartered to render advice, guidance, and counsel on the effective management and strategic objectives of the …
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Programs & Platform Leads
Facility, the JGI plays a leadership role in enabling the frontiers of research related to DOE’s missions in bioenergy, carbon cycling and biogeochemistry. In … that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, …
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