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Extreme Scale De Novo Metagenome Assembly
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Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
…   Scanning the California oak woodlands from the air, large swaths of the bleached, skeletal remains of trees can … destroyer” and it has served as just that on a catastrophic scale from Baja California north into Oregon and beyond. The … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Methodology for Extracting High-Molecular-Weight DNA from Field Collections of Macrofungi
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Insights into the Maize Pan-Genome and Pan-Transcriptome
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Tracking the Origins of Methane-Producing Microbes
… archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … applied mini-metagenomics to these samples by sorting the microbes into small pools of cells that were then sequenced … is typically observed, but to the “TACK” superphylum,” said study first author Bojk Berghuis. “This provided us with …
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An Integrated Dataset to Understand Ecosystem Interaction
… outlined in  Scientific Data connects molecular features to large ecosystem-level processes for the first time. By … data set will help identify how different elements of the ecosystem interact and respond to changes in the … Finally, using transcriptomics, researchers were able to study which of the trees were turned on or off in response …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s … is not limited to  Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to … confirmation bias, because it enables scientists to study how methanogenesis takes place in the context of the …
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Succession in the petroleum reservoir microbiome through an oil field production lifecycle
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Niche differentiation is spatially and temporally regulated in the rhizosphere
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Lignin‐modifying processes in the rhizosphere of arid land grasses
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Identifying the Microbial Cleanup Crew at a Superfund Site
… PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … to bioremediation efforts for decades. Identifying resident microbes that can help bioremediate toxic substances has led to the development of cost-effective environmental cleanup strategies. Summary …
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