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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. … 4, 2019, issue of Nature Microbiology , they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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Picking Up Threads of Cotton Genomics
… darwinii are the others. All of these cotton lineages have genomes approximately 2.3 billion bases or Gigabases (Gb) in … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton … Agricultural University (China), Texas A&M University System, U.S. Department of Agriculture-Agricultural Research …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The … to the cleanup by continuing to access the JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the … Center for Research Resources (NCRR) (5P20RR016480-12) and the National Institute of General Medical Sciences …
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Analyze Data
… data we generate, tools like artificial intelligence can empower the global research community.   We have two key … integrate data in support of new research questions that span domains. We also work with our partners to build infrastructure in support of new analysis techniques.  …
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A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans
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Microbial Genomics & Metagenomics (MGM) Workshop
… Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: … hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of … their gene expression, the team then sequenced community genomes and expressed gene transcripts (metagenomes, … software suite, BBTools , and relying on the JGI Integrated Microbial Genomes & Microbiomes (IMG/M) system . …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. … model with PhycoCosm, how do we go about getting it in your system? A: I think the best way is to contact us for …
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Webinar: MycoCosm Tutorial
… A(nswer): Our focus is on fungi, algae, plants, and the microbial world but we also annotated several Phytophthora … While are still working on finalizing the tree and related publication the tree is still in development and not … (are these functional annotations) and how are these integrated within the platform? A: Please contact the …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… The  Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been … under Contract No. DE-AC02-05CH11231. This research used resources of the National Energy Research Scientific …
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Genome Insider
… host Menaka Wilhelm interviews researchers — JGI Users — and dives into their work on all kinds of organisms, from plants and fungi to microbes and viruses. Listen in to explore …
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity hotspots Over the past few decades, … technologies have led to an abundance of microbial genomes becoming available to the global research … Information (NCBI) GenBank collection and on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) database. …
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