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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus Lentinula edodes
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections … at the forest floor. For the first time, they compared three different fungal guilds in a range of different … found in soil samples, and assembled those RNA transcripts into a metatranscriptome. Overall, they found that despite …
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Dan Rokhsar
… which they have applied and refined in the sequencing and evolutionary analysis of over fifty plant and animal … and Development after his research interests shifted from condensed matter physics to computational biology, … IBM Watson Research Center, Yorktown Heights, NY … Publications … 2018 Marthella Foskett Brown Chair, …
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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
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Genome resources for three modern cotton lines guide future breeding efforts
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Igor Grigoriev
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits. Nature Commun … … Fungal & Algal Science Program … Education … Selected Publications … Awards and Service …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, for which quality DNA has been … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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Insights into Secondary Metabolism from a Global Analysis of Prokaryotic Biosynthetic Gene Clusters
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… that on a catastrophic scale from Baja California north into Oregon and beyond. The disease is known more commonly … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … Tyler BM et al. Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis . …
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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FICUS-NERSC/KBASE
The ranked proposal list, along with a recommendation from management at JGI and the other participating … JGI scientists as needed), and the work plan is written into a Statement of Work document. … For sequencing … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …
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