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Taking Stock of the Known and Unknown Microbial Space
… in sequencing technologies have led to an abundance of microbial genomes becoming available to the global … quality scores representing potential genomes, and nearly 44,000 metagenomes. All of the data are publicly available … Information (NCBI) GenBank collection and on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) database. …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … the United States in … I forget the number, but it’s over 42, 43 states, but we’re also in many countries, including … to unpack experimentally. But there’s a couple of different systems where people have made strides in that area. Where I …
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Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … a good catalog of what’s out there so that we can do more comparative analysis and maybe– I don’t know– start to put … that if you looked at the grant applications for the last 40 years for studying biosynthetic pathways, all of them …
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … portals and tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for microbial and metagenome datasets, MycoCosm for comparative analysis of …
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … portals and tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for microbial and metagenome datasets, MycoCosm for comparative analysis of …
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Metagenomic analysis of a stable trichloroethene-degrading microbial community
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … viral diversity. “Although the technical challenges of data analysis at this scale are formidable.” Computational Sieves … available metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. …
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Integrative analysis of multimodal mass spectrometry data in MZmine 3
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Applying Viral Genomics Expertise to Understanding the Human Virome
… viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … expertise in developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) … The work is supported by NIH Common Fund grant 1U01DE034196-01. The JGI team, including Kyrpides, Camargo, and …
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Operating Expenses
FY2023 Spending Profile The JGI is funded primarily by the DOE Office of Biological and Environmental Research (BER), a program …
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Metagenomic Profiling Reveals Lignocellulose Degrading System in a Microbial Community Associated with a Wood-Feeding Beetle
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