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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … surface where algae grow. Armed with a better understanding of the alga’s stress resistance and ability to adapt to … Biology article highlights how one microalga collected from water on the ice surface handles such fluctuations. P. …
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Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … on the largest analysis of 5mC distribution across the fungal tree of life to date, involving more than 500 species … technologies for producing both reference genomes and epigenomics, researchers are unwrapping complex mechanisms of …
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Consensus statement from the first RdRp Summit: advancing RNA virus discovery at scale across communities
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JGI Workshops at 33rd Fungal Genetics Conference
… Wednesday, March 18: "Genomics of Environmental Opportunism: Fungal Adaptation at the Edge of Pathogenicity" Workshop …
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User Programs
… and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user … FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and Materials Status … and metabolomics. Proposals must request capabilities from both JGI and the Molecular Foundry.  Submission …
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An Automated Tool for Assessing Virus Data Quality
… and more virus sequences are being recovered and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … and best practices for characterizing uncultivated viruses. Following up on those guidelines, JGI researchers …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … in 2018. She selected one of the projects posted by JGI fungal researchers, Igor Grigoriev and Asaf Salamov, and …
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Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics
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A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators
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Complex transcriptional regulations of a hyperparasitic quadripartite system in giant viruses infecting protists
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