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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  … engineering system that allows scientists to conduct genome-wide screens and explore biosynthetic pathway. Thus far, the … domesticate some 60 strains, inserting into them a genetic sequence that acts as a “landing pad.” Mouncey adds, …
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Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa
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Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science … Computational Biology , Nucleic Acids Research . Over 80 publications in peer-reviewed journals including Nature, … Visel A * (2013). Rapid and Pervasive Changes in Genome-wide Enhancer Usage during Mammalian Development. Cell 155, …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora … organism for filamentous fungi, all of which contain a wide array of plant cell-wall degrading enzymes (PCWDEs) … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… previously unseen — is, in fact, a microscopic water mold, genetically related to such aquatic species as diatoms and … trace its origins, the researchers engaged the DOE Joint Genome Institute (JGI), with support of the US Department of … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Microorganisms Involved in Methylmercury Demethylation and Mercury Reduction are Widely Distributed and Active in the Bathypelagic Deep Ocean Waters
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Mutant phenotypes for thousands of bacterial genes of unknown function
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Codon bias, nucleotide selection, and genome size predict in situ bacterial growth rate and transcription in rewetted soil
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Metagenomic reconstructions of bacterial CRISPR loci constrain population histories
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Jane Grimwood Named HudsonAlpha Genomics Chair
City. Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … Center), HudsonAlpha and the JGI also identified a gene related to seed dispersal in wild populations for the …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and then use computational tools to analyze biosynthetic gene clusters and then develop them for a range of … sequences from underrepresented green algae groups in a wide range of environments. A similar proposal focused on …
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