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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi, again. This is Dan, and you’re … clumps, almost like, you know, like an organism. They have specialized cells and the ecology there is really …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… A special issue of Synthetic Biology celebrates research … Science Program. Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven … search environmental data, they developed a two-stage metagenomic detection pipeline: First, they scanned over 26,000 …
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User Advisory Committees
… of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core values, which guide the relationships we nurture in our workplace and seek to establish with our stakeholders. The guiding principles … and the annual meeting. The UEC also acts as a liaison to the user community and the broader scientific community, …
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Programs & Platform Leads
… a leadership role in providing genome science capabilities to support BER's mission of achieving a predictive understanding of complex … Science Programs and draw from the infrastructure of Genomic Technologies and Data Science & Informatics. The JGI …
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Dynamic substrate preferences predict metabolic properties of a simple microbial consortium
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Sodalis ligni Strain 159R Isolated from an Anaerobic Lignin-Degrading Consortium
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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Plant Microbial Interactions Group
… associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants … are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including …
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Signatures of transposon-mediated genome inflation, host specialization, and photoentrainment in Entomophthora muscae and allied entomophthoralean fungi
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Extreme overall mushroom genome expansion in Mycena s.s. irrespective of plant hosts or substrate specializations.
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Genomics-enabled analysis of specialized metabolism in bioenergy crops: current progress and challenges
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